SNP Profiles of IMC 67   View Data

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 Key

 1234567891011121314
_Input profile
TTCCCCGTCTGGACCGAGCTAAGGAACC
1._RUQ_1056
__CC_____AG_AA___
2._IMC_67
__CCGTCT_ACCGAGCT__AA_
3._IMC_67
__CCGTCT_ACCGAGCT__AA_
4._IMC_67
__CCGTCT_ACCGAGCT__AA_
5._IMC_67
__CCGTCT_ACCGAGCT__AA_
6._IMC_67
__CCGTCT_ACCGAGCT__AA_
7._IMC_67
__CCGTCT_ACCGAGCT__AA_
8._IMC_67
__CCGTCT_ACCGAGCT__AA_
9._IMC_67
__CCGTCT_ACCGAGCT____
10._IMC_67
__CCGTCT_ACCGAGCT____
11._GC-05-82-2-33
TTCCCCGTCTGGACCGAGCTAAGGAACC
12._GC-05-82-2-33
TTCCCCGTCTGGACCGAGCTAAGGAACC
13._GC-05-082-2-33
TTCCCCGTCTGGACCGAGCTAAGGAACC
14._GC-05-82-2-33
TTCCCCGTCTGGACCGAGCTAAGG_CC
15._GC-05-82-2-33
TTCCCCGTCTGGACCGAGCTAAGG_CC
16._RUQ_1056
__CCGTCT_ACCGAGCT__AA_
17._IMC_67
__CCGTCT_ACCGAGCT__AA_
18._IMC67
__AA_CTGGACGGAA__GGATCC
19._GC-05-82-2-33
AACCCCACAGGGACCGAGAGAAGGAAGG
20._GC-05-82-2-33
AACCCCACAGGGACCGAGAGAAGGAAGG
21._RUQ_1056
AACCCCACAGGGACCGAGAGAAGGAAGG
22._IMC_67_Fld#_152A_Plt#_1
AACCCCACAGGGACCGAGAGAAGGAAGG
23._IMC_67_Fld#_152B_Plt#_4
AAACACCCAAGGCCGGGGAGAGGGAACC
 1516171819202122232425262728
_Input profile
AAACCCGTCGACCCCCTTGGGGTTCCCC
1._RUQ_1056
_AC__GGACCC_TTGGGG_CCCC
2._IMC_67
AAACCCGTGGAC_CC_GG___CC
3._IMC_67
AAACCCGTGGAC_CC_GG___CC
4._IMC_67
AAACCCGTGGAC_CC_GG___CC
5._IMC_67
AAACCCGTGGAC_CC_GG___CC
6._IMC_67
AAACCCGTGGAC_CC_GG___CC
7._IMC_67
AAACCCGTGGAC_CC_GG___CC
8._IMC_67
AAACCCGTGGAC_CC_GG___CC
9._IMC_67
AAACCCGTGGAC_CC_GG___CC
10._IMC_67
AAACCCGTGGAC_CC_GG___CC
11._GC-05-82-2-33
AAACCCGTGGACCCCCCCGGGGTTCCCC
12._GC-05-82-2-33
AAACCCGTGGACCCCCCCGGGGTTCCCC
13._GC-05-082-2-33
AAACCCGTGGACCCCCCCGGGGTTCCCC
14._GC-05-82-2-33
AAACCCGTGGACCCCCCCGGGGTTCCCC
15._GC-05-82-2-33
AAACCCGTGGACCCCCCCGGGGTTCCCC
16._RUQ_1056
AAACCCGTGGAC_CC_GG___CC
17._IMC_67
AAACCCGTGGAC_CC_GG___CC
18._IMC67
____GGACCC______CG
19._GC-05-82-2-33
_AC_ACCGACGGGG_CCGGAACCGG
20._GC-05-82-2-33
_AC_ACCGACGGGG_CCGGAACCGG
21._RUQ_1056
_AC_ACCGACGGGG_CCGGAACCGG
22._IMC_67_Fld#_152A_Plt#_1
_AC_ACCGACGGGG_CCGGAACCGG
23._IMC_67_Fld#_152B_Plt#_4
_CC_CCGGACGGAA_CCAAAACCGG
 2930313233343536373839404142
_Input profile
CCTTAACCCCGGGGTTGTTTCCTTGGAG
1._RUQ_1056
__AACC____GT___GG_
2._IMC_67
_CTAA_CC___GT__TTGGAG
3._IMC_67
_CTAA_CC___GT__TTGGAG
4._IMC_67
_CTAA_CC___GT__TTGGAG
5._IMC_67
_CTAA_CC___GT__TTGGAG
6._IMC_67
_CTAA_CC___GT__TTGGAG
7._IMC_67
_CTAA_CC___GT__TTGGAG
8._IMC_67
_CTAA_CC___GT__TTGGAG
9._IMC_67
_CTAA_CC___GT__TTGGAG
10._IMC_67
_CTAA_CC___GT__TTGGAG
11._GC-05-82-2-33
CCCTAACCCCGGGGTTGTTTCCTTGGAG
12._GC-05-82-2-33
CCCTAACCCCGGGGTTGTTTCCTTGGAG
13._GC-05-082-2-33
CCCTAACCCCGGGGTTGTTTCCTTGGAG
14._GC-05-82-2-33
CCCTAACCCCGGGGTTGTTTCCTTGGAG
15._GC-05-82-2-33
CCCTAACCCCGGGGTTGTTTCCTTGGAG
16._RUQ_1056
_CTAG_CC___GT__TTGGAG
17._IMC_67
_CTAG_CC___GT__TTGGAG
18._IMC67
GGCC__CC_GGTT__CC_CG_
19._GC-05-82-2-33
_AGAA_GGCCGG_ACAAGGAACCAG
20._GC-05-82-2-33
_AGAA_GGCCGG_ACAAGGAACCAG
21._RUQ_1056
_AGAA_GGCCGG_ACAAGGAACCAG
22._IMC_67_Fld#_152A_Plt#_1
_AGAA_GGCCGG_ACAAGGAACCAG
23._IMC_67_Fld#_152B_Plt#_4
_AGAA_GGCCGG_AAGGGGAGGGAA

Input profile: IMC_67 RUQ_1056

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._IMC_67 RUQ_1056

96.9 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._IMC_67

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5233 4 > FP
 Dapeng Zhang, 2016

3._IMC_67

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5233 5 > FP
 Dapeng Zhang, 2016

4._IMC_67

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5233 2 > FP
 Dapeng Zhang, 2016

5._IMC_67

95.8 %
24 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

6._IMC_67

95.8 %
24 shared markers

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Estation Experimental Tropical Pichilingue, Ecuador
 Dapeng Zhang, 2016

7._IMC_67

95.8 %
24 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P55
 Dapeng Zhang, 2016

8._IMC_67

95.8 %
24 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1/Rep 19 C0176
 Dapeng Zhang, 2016

9._IMC_67

95.7 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5233 3 > FP
 Dapeng Zhang, 2016

10._IMC_67

95.7 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5233 1 > FP
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

11._IMC_67 GC-05-82-2-33

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL2
Notes: PL2 FP2
 Mars, 2018

12._IMC_67 GC-05-82-2-33

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL4
Notes: PL4 FP3
 Mars, 2018

13._IMC_67 GC-05-082-2-33

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

14._IMC_67 GC-05-82-2-33

95.1 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL1
Notes: PL1 FP1
 Mars, 2018

15._IMC_67 GC-05-82-2-33

95.1 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL3
Notes: PL3 FP5
 Mars, 2018

16._IMC_67 RUQ_1056

93.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

17._IMC_67

93.8 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 647
 Dapeng Zhang, 2016

18._IMC_67 IMC67

70 %
20 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

19._IMC_67 GC-05-82-2-33

47.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

20._IMC_67 GC-05-82-2-33

47.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: 1 > FP1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

21._IMC_67 RUQ_1056

47.2 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

22._IMC_67 IMC_67_Fld#_152A_Plt#_1

47.2 %
36 shared markers

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USDA-TARS, United States of America
Location: Field: 152A, Tree: 1
 Mars, 2018

23._IMC_67 IMC_67_Fld#_152B_Plt#_4

37.5 %
36 shared markers

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USDA-TARS, United States of America
Location: Field: 152B, Tree: 4
 Mars, 2018

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484